ADAM2Fasta
cli
ADAM2FastaArgs
cli
ADAM2Vcf
cli
ADAM2VcfArgs
cli
ADAMMain
cli
ADAMModule
cli
Adam2Fastq
cli
Adam2FastqArgs
cli
AlleleCount
cli
AlleleCountArgs
cli
AlleleCountHelper
cli
accessControl
PluginExecutorArgs
adam
bdgenomics
adamFile
ADAM2VcfArgs AlleleCountArgs
adamInputPath
CalculateDepthArgs
apply
ADAM2Fasta ADAM2Vcf ADAMMain Adam2Fastq AlleleCount BuildInformation CalculateDepth CountContigKmers CountReadKmers Fasta2ADAM Features2ADAM FlagStat Flatten Fragments2Reads ListDict PluginExecutor PrintADAM PrintGenes PrintTags Reads2Fragments Transform Vcf2ADAM VcfAnnotation2ADAM View WigFix2Bed
applyFilters
View
args
ADAM2Fasta ADAM2Vcf Adam2Fastq AlleleCount CalculateDepth CountContigKmers CountReadKmers Fasta2ADAM Features2ADAM FlagStat Flatten Fragments2Reads ListDict PluginExecutor PrintADAM PrintGenes PrintTags Reads2Fragments Transform Vcf2ADAM VcfAnnotation2ADAM View WigFix2Bed
asSingleFile
Fragments2ReadsArgs Reads2FragmentsArgs TransformArgs ViewArgs