org.bdgenomics.adam.cli

Reads2CoverageArgs

class Reads2CoverageArgs extends Args4jBase with ParquetArgs

Linear Supertypes
ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Reads2CoverageArgs
  2. ParquetArgs
  3. ParquetRDDArgs
  4. Args4jBase
  5. AnyRef
  6. Any
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Instance Constructors

  1. new Reads2CoverageArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. var asSingleFile: Boolean

  8. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  9. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  10. var collapse: Boolean

  11. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  12. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  13. var disableFastConcat: Boolean

  14. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  15. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  16. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  17. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  18. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  19. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  20. var inputPath: String

  21. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  22. var logLevel: String

    Definition Classes
    ParquetArgs

  23. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  24. final def notify(): Unit

    Definition Classes
    AnyRef

  25. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  26. var onlyNegativeStrands: Boolean

  27. var onlyPositiveStrands: Boolean

  28. var outputPath: String

  29. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  30. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  31. var sortLexicographically: Boolean

  32. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  33. def toString(): String

    Definition Classes
    AnyRef → Any

  34. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  35. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  36. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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