org.bdgenomics.adam.cli

ViewArgs

class ViewArgs extends Args4jBase with ParquetArgs with ADAMSaveAnyArgs

Linear Supertypes
ADAMSaveAnyArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. ViewArgs
  2. ADAMSaveAnyArgs
  3. SaveArgs
  4. ParquetArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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Instance Constructors

  1. new ViewArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. var asSingleFile: Boolean

    Definition Classes
    ViewArgs → ADAMSaveAnyArgs

  8. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  9. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  10. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  11. var deferMerging: Boolean

    Definition Classes
    ViewArgs → ADAMSaveAnyArgs

  12. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  13. var disableFastConcat: Boolean

    Definition Classes
    ViewArgs → ADAMSaveAnyArgs

  14. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  15. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  16. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  17. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  18. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  19. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  20. var inputPath: String

  21. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  22. var logLevel: String

    Definition Classes
    ParquetArgs

  23. var matchAllBits: Int

  24. var matchSomeBits: Int

  25. var mismatchAllBits: Int

  26. var mismatchSomeBits: Int

  27. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  28. final def notify(): Unit

    Definition Classes
    AnyRef

  29. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  30. var outputPath: String

    Definition Classes
    ViewArgs → SaveArgs

  31. var outputPathArg: String

  32. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  33. var printCount: Boolean

  34. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  35. var sortFastqOutput: Boolean

    Definition Classes
    ViewArgs → ADAMSaveAnyArgs

  36. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  37. def toString(): String

    Definition Classes
    AnyRef → Any

  38. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  39. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ADAMSaveAnyArgs

Inherited from SaveArgs

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

Ungrouped