observationsPath
TransformArgs
onlyvariants
Vcf2ADAMArgs
org
root
output
PluginExecutor
outputFile
PrintADAMArgs
outputOriginalBaseQualities
Adam2FastqArgs
outputPath
ADAM2VcfArgs
AlleleCountArgs
CountContigKmersArgs
CountReadKmersArgs
Fasta2ADAMArgs
Features2ADAMArgs
FlattenArgs
TransformArgs
Vcf2ADAMArgs
VcfAnnotation2ADAMArgs
ViewArgs
outputPath2
Adam2FastqArgs
outputPathArg
ViewArgs