org.bdgenomics.adam.cli

Fasta2ADAMArgs

class Fasta2ADAMArgs extends Args4jBase with ParquetSaveArgs

Linear Supertypes
ParquetSaveArgs, SaveArgs, ParquetArgs, ParquetRDDArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Fasta2ADAMArgs
  2. ParquetSaveArgs
  3. SaveArgs
  4. ParquetArgs
  5. ParquetRDDArgs
  6. Args4jBase
  7. AnyRef
  8. Any
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  1. Public
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Instance Constructors

  1. new Fasta2ADAMArgs()

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  5. var blockSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  7. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  8. var disableDictionaryEncoding: Boolean

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  9. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase

  10. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  11. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  12. var fastaFile: String

  13. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. var fragmentLength: Long

  15. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  16. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  17. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  18. var logLevel: String

    Definition Classes
    ParquetArgs

  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  20. final def notify(): Unit

    Definition Classes
    AnyRef

  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  22. var outputPath: String

    Definition Classes
    Fasta2ADAMArgs → SaveArgs

  23. var pageSize: Int

    Definition Classes
    ParquetArgs → ParquetRDDArgs

  24. var partitions: Int

  25. var printMetrics: Boolean

    Definition Classes
    Args4jBase

  26. var reads: String

  27. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  28. def toString(): String

    Definition Classes
    AnyRef → Any

  29. var verbose: Boolean

  30. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  32. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetSaveArgs

Inherited from SaveArgs

Inherited from ParquetArgs

Inherited from ParquetRDDArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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