ReadFilter
View
reads
Fasta2ADAMArgs
recalibrateBaseQualities
TransformArgs
repartition
Adam2FastqArgs
CountReadKmersArgs
TransformArgs
run
ADAM2Vcf
Adam2Fastq
AlleleCount
BuildInformation
CalculateDepth
CountContigKmers
CountReadKmers
Fasta2ADAM
Features2ADAM
FlagStat
Flatten
ListDict
PluginExecutor
PrintADAM
PrintGenes
PrintTags
Transform
Vcf2ADAM
VcfAnnotation2ADAM
View
WigFix2Bed