WRITE_ORIGINAL_QUAL
InterleavedFASTQInFormatter
WRITE_SUFFIXES
InterleavedFASTQInFormatter
WriteADAMRecord
Timers
WriteBAMRecord
Timers
WriteCRAMRecord
Timers
WriteSAMRecord
Timers
wDelete
SmithWatermanConstantGapScoring
wInsert
SmithWatermanConstantGapScoring
wMatch
SmithWatermanConstantGapScoring
wMismatch
SmithWatermanConstantGapScoring
withMateMappedToDiffChromosome
FlagStatMetrics
withMateMappedToDiffChromosomeMapQ5
FlagStatMetrics
withSelfAndMateMapped
FlagStatMetrics
write
ReadBucketSerializer
ReferencePositionPairSerializer
ReferencePositionSerializer
ReferenceRegionSerializer
SingleReadBucketSerializer
InFormatter
InterleavedFASTQInFormatter
AnySAMInFormatter
IndelRealignmentTargetSerializer
TargetSetSerializer
ZippedTargetSetSerializer
VCFInFormatter
AvroSerializer
TwoBitFileSerializer
writeArray
ReadBucketSerializer
SingleReadBucketSerializer
writeOptionalReferencePos
ReferencePositionPairSerializer
writer
AvroSerializer