The number of equally-sized regions into which the total genomic space is partitioned; the total number of partitions is numParts + 1, with the "+1" resulting from one extra partition that is used to capture null or UNMAPPED values of the ReferencePosition type.
a map relating sequence-name to length and indicating the set and length of all extant sequences in the genome.
The number of equally-sized regions into which the total genomic space is partitioned; the total number of partitions is numParts + 1, with the "+1" resulting from one extra partition that is used to capture null or UNMAPPED values of the ReferencePosition type.
a map relating sequence-name to length and indicating the set and length of all extant sequences in the genome.
GenomicPositionPartitioner partitions ReferencePosition objects into separate, spatially-coherent regions of the genome.
This can be used to organize genomic data for computation that is spatially distributed (e.g. GATK and Queue's "scatter-and-gather" for locus-parallelizable walkers).
The number of equally-sized regions into which the total genomic space is partitioned; the total number of partitions is numParts + 1, with the "+1" resulting from one extra partition that is used to capture null or UNMAPPED values of the ReferencePosition type.
a map relating sequence-name to length and indicating the set and length of all extant sequences in the genome.