org.broadinstitute.hellbender.cmdline.argumentcollections

Class RequiredFeatureInputArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredFeatureInputArgumentCollection

All Implemented Interfaces:

java.io.Serializable

public final class RequiredFeatureInputArgumentCollection
extends java.lang.Object
implements java.io.Serializable

An argument collection for use with tools that accept one or more input files containing Feature records (eg., BED files, hapmap files, etc.), and require at least one such input. For variant inputs, tools should typically use one of the VariantInputArgumentCollections instead.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
java.util.List<FeatureInput<htsjdk.tribble.Feature>>	featureFiles

Constructor Summary

Constructors

Constructor and Description
RequiredFeatureInputArgumentCollection()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

featureFiles

@Argument(fullName="feature",
          shortName="F",
          doc="File containing features",
          optional=false)
public java.util.List<FeatureInput<htsjdk.tribble.Feature>> featureFiles

Constructor Detail

RequiredFeatureInputArgumentCollection

public RequiredFeatureInputArgumentCollection()