org.broadinstitute.hellbender.cmdline.argumentcollections

Class RequiredVariantInputArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.cmdline.argumentcollections.RequiredVariantInputArgumentCollection

All Implemented Interfaces:

java.io.Serializable

public final class RequiredVariantInputArgumentCollection
extends java.lang.Object
implements java.io.Serializable

An argument collection for use with tools that accept one or more input files containing VariantContext records (eg., VCF files), and require at least one such input.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
java.util.List<FeatureInput<htsjdk.variant.variantcontext.VariantContext>>	variantFiles

Constructor Summary

Constructors

Constructor and Description
RequiredVariantInputArgumentCollection()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

variantFiles

@Argument(fullName="variant",
          shortName="V",
          doc="One or more files containing variants",
          optional=false)
public java.util.List<FeatureInput<htsjdk.variant.variantcontext.VariantContext>> variantFiles

Constructor Detail

RequiredVariantInputArgumentCollection

public RequiredVariantInputArgumentCollection()