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Hierarchy For Package org.broadinstitute.hellbender.tools.copynumber
Package Hierarchies:
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Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.cmdline.
CommandLineProgram
(implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
org.broadinstitute.hellbender.tools.copynumber.
CallCopyRatioSegments
org.broadinstitute.hellbender.tools.copynumber.
DenoiseReadCounts
org.broadinstitute.hellbender.tools.copynumber.
DetermineGermlineContigPloidy
org.broadinstitute.hellbender.engine.
GATKTool
org.broadinstitute.hellbender.tools.copynumber.
AnnotateIntervals
org.broadinstitute.hellbender.engine.
LocusWalker
org.broadinstitute.hellbender.tools.copynumber.
CollectAllelicCounts
org.broadinstitute.hellbender.tools.copynumber.
PostprocessGermlineCNVCalls
org.broadinstitute.hellbender.tools.copynumber.
PreprocessIntervals
org.broadinstitute.hellbender.engine.
ReadWalker
org.broadinstitute.hellbender.tools.copynumber.
CollectReadCounts
org.broadinstitute.hellbender.tools.copynumber.
GermlineCNVCaller
org.broadinstitute.hellbender.tools.copynumber.
ModelSegments
org.broadinstitute.hellbender.engine.spark.
SparkCommandLineProgram
(implements java.io.Serializable)
org.broadinstitute.hellbender.tools.copynumber.
CreateReadCountPanelOfNormals
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.broadinstitute.hellbender.tools.copynumber.
DetermineGermlineContigPloidy.RunMode
org.broadinstitute.hellbender.tools.copynumber.
GermlineCNVCaller.RunMode
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