Hierarchy For Package org.broadinstitute.hellbender.tools.examples

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.broadinstitute.hellbender.cmdline.CommandLineProgram (implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
    • org.broadinstitute.hellbender.engine.GATKTool
      • org.broadinstitute.hellbender.engine.AssemblyRegionWalker
        • org.broadinstitute.hellbender.tools.examples.ExampleAssemblyRegionWalker
      • org.broadinstitute.hellbender.engine.FeatureWalker<F>
        • org.broadinstitute.hellbender.tools.examples.ExampleFeatureWalker
      • org.broadinstitute.hellbender.engine.IntervalWalker
        • org.broadinstitute.hellbender.tools.examples.ExampleIntervalWalker
      • org.broadinstitute.hellbender.engine.LocusWalker
        • org.broadinstitute.hellbender.tools.examples.ExampleLocusWalker
      • org.broadinstitute.hellbender.engine.ReadWalker
        • org.broadinstitute.hellbender.tools.examples.ExamplePostTraversalPythonExecutor
        • org.broadinstitute.hellbender.tools.examples.ExampleReadWalkerWithReference
        • org.broadinstitute.hellbender.tools.examples.ExampleReadWalkerWithVariants
        • org.broadinstitute.hellbender.tools.examples.ExampleStreamingPythonExecutor
      • org.broadinstitute.hellbender.engine.VariantWalkerBase
        • org.broadinstitute.hellbender.engine.VariantWalker
          • org.broadinstitute.hellbender.tools.examples.ExampleVariantWalker
          • org.broadinstitute.hellbender.engine.TwoPassVariantWalker
            • org.broadinstitute.hellbender.tools.examples.ExampleTwoPassVariantWalker
    • org.broadinstitute.hellbender.engine.spark.SparkCommandLineProgram (implements java.io.Serializable)
      • org.broadinstitute.hellbender.tools.examples.ExampleNioCountReads
      • org.broadinstitute.hellbender.engine.spark.GATKSparkTool
        • org.broadinstitute.hellbender.engine.spark.AssemblyRegionWalkerSpark
          • org.broadinstitute.hellbender.tools.examples.ExampleAssemblyRegionWalkerSpark
        • org.broadinstitute.hellbender.engine.spark.IntervalWalkerSpark
          • org.broadinstitute.hellbender.tools.examples.ExampleIntervalWalkerSpark
        • org.broadinstitute.hellbender.engine.spark.ReadWalkerSpark
          • org.broadinstitute.hellbender.tools.examples.ExampleReadWalkerWithReferenceSpark
        • org.broadinstitute.hellbender.engine.spark.VariantWalkerSpark
          • org.broadinstitute.hellbender.tools.examples.ExampleVariantWalkerSpark