Hierarchy For Package org.broadinstitute.hellbender.tools.spark.sv.discovery.inference

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications.IntraChrStrandSwitchBreakpointComplications
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications.SmallDuplicationWithImpreciseDupRangeBreakpointComplications
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications.SmallDuplicationWithPreciseDupRangeBreakpointComplications
  • org.broadinstitute.hellbender.cmdline.CommandLineProgram (implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
    • org.broadinstitute.hellbender.engine.spark.SparkCommandLineProgram (implements java.io.Serializable)
      • org.broadinstitute.hellbender.engine.spark.GATKSparkTool
        • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.CpxVariantReInterpreterSpark
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.CpxVariantInterpreter
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.ImpreciseVariantDetector
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.NovelAdjacencyAndAltHaplotype
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SegmentedCpxVariantSimpleVariantExtractor (implements java.io.Serializable)
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SegmentedCpxVariantSimpleVariantExtractor.ExtractedSimpleVariants
  • com.esotericsoftware.kryo.Serializer<T>
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications.IntraChrStrandSwitchBreakpointComplications.Serializer
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications.SmallDuplicationWithImpreciseDupRangeBreakpointComplications.Serializer
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.BreakpointComplications.SmallDuplicationWithPreciseDupRangeBreakpointComplications.Serializer
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.NovelAdjacencyAndAltHaplotype.Serializer
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SimpleChimera.Serializer
    • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SimpleNovelAdjacencyAndChimericAlignmentEvidence.Serializer
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SimpleChimera
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SimpleNovelAdjacencyAndChimericAlignmentEvidence
  • org.broadinstitute.hellbender.tools.spark.sv.discovery.inference.SimpleNovelAdjacencyInterpreter