org.broadinstitute.hellbender.tools.spark.sv.utils

Class GATKSVVCFHeaderLines

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFHeaderLines

public final class GATKSVVCFHeaderLines
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
GATKSVVCFHeaderLines()

Method Summary

Modifier and Type	Method and Description
static htsjdk.variant.vcf.VCFFilterHeaderLine	getFilterLine(java.lang.String id)
static java.util.Set<htsjdk.variant.vcf.VCFFilterHeaderLine>	getFilterLines()
static htsjdk.variant.vcf.VCFFormatHeaderLine	getFormatLine(java.lang.String id)
static java.util.Set<htsjdk.variant.vcf.VCFFormatHeaderLine>	getFormatLines()
static htsjdk.variant.vcf.VCFInfoHeaderLine	getInfoLine(java.lang.String id)
static java.util.Set<htsjdk.variant.vcf.VCFInfoHeaderLine>	getInfoLines()
static htsjdk.variant.vcf.VCFSimpleHeaderLine	getSymbAltAlleleLine(java.lang.String id)
static java.util.Set<htsjdk.variant.vcf.VCFSimpleHeaderLine>	getSymbAltAlleleLines()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GATKSVVCFHeaderLines

public GATKSVVCFHeaderLines()

Method Detail

getInfoLine

public static htsjdk.variant.vcf.VCFInfoHeaderLine getInfoLine(java.lang.String id)

getInfoLines

public static java.util.Set<htsjdk.variant.vcf.VCFInfoHeaderLine> getInfoLines()

getFormatLine

public static htsjdk.variant.vcf.VCFFormatHeaderLine getFormatLine(java.lang.String id)

getFormatLines

public static java.util.Set<htsjdk.variant.vcf.VCFFormatHeaderLine> getFormatLines()

getFilterLine

public static htsjdk.variant.vcf.VCFFilterHeaderLine getFilterLine(java.lang.String id)

getFilterLines

public static java.util.Set<htsjdk.variant.vcf.VCFFilterHeaderLine> getFilterLines()

getSymbAltAlleleLine

public static htsjdk.variant.vcf.VCFSimpleHeaderLine getSymbAltAlleleLine(java.lang.String id)

getSymbAltAlleleLines

public static java.util.Set<htsjdk.variant.vcf.VCFSimpleHeaderLine> getSymbAltAlleleLines()