org.broadinstitute.hellbender.utils.pairhmm

Enum PairHMM.Implementation

java.lang.Object

java.lang.Enum<PairHMM.Implementation>

org.broadinstitute.hellbender.utils.pairhmm.PairHMM.Implementation

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<PairHMM.Implementation>

Enclosing class:

PairHMM

public static enum PairHMM.Implementation
extends java.lang.Enum<PairHMM.Implementation>

Enum Constant Summary

Enum Constants

Enum Constant and Description
AVX_LOGLESS_CACHING
AVX_LOGLESS_CACHING_OMP
EXACT
EXPERIMENTAL_FPGA_LOGLESS_CACHING
FASTEST_AVAILABLE
LOGLESS_CACHING
ORIGINAL

Method Summary

Modifier and Type	Method and Description
PairHMM	makeNewHMM(org.broadinstitute.gatk.nativebindings.pairhmm.PairHMMNativeArguments args)
static PairHMM.Implementation	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static PairHMM.Implementation[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

EXACT

public static final PairHMM.Implementation EXACT

ORIGINAL

public static final PairHMM.Implementation ORIGINAL

LOGLESS_CACHING

public static final PairHMM.Implementation LOGLESS_CACHING

AVX_LOGLESS_CACHING

public static final PairHMM.Implementation AVX_LOGLESS_CACHING

AVX_LOGLESS_CACHING_OMP

public static final PairHMM.Implementation AVX_LOGLESS_CACHING_OMP

EXPERIMENTAL_FPGA_LOGLESS_CACHING

public static final PairHMM.Implementation EXPERIMENTAL_FPGA_LOGLESS_CACHING

FASTEST_AVAILABLE

public static final PairHMM.Implementation FASTEST_AVAILABLE

Method Detail

values

public static PairHMM.Implementation[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (PairHMM.Implementation c : PairHMM.Implementation.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static PairHMM.Implementation valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null

makeNewHMM

public PairHMM makeNewHMM(org.broadinstitute.gatk.nativebindings.pairhmm.PairHMMNativeArguments args)