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Hierarchy For Package org.broadinstitute.hellbender.utils.read.mergealignment
Package Hierarchies:
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Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.utils.read.mergealignment.
AbstractAlignmentMerger
org.broadinstitute.hellbender.utils.read.mergealignment.
SamAlignmentMerger
org.broadinstitute.hellbender.utils.read.mergealignment.
BestEndMapqPrimaryAlignmentStrategy
(implements org.broadinstitute.hellbender.utils.read.mergealignment.
PrimaryAlignmentSelectionStrategy
)
org.broadinstitute.hellbender.utils.read.mergealignment.
BestMapqPrimaryAlignmentSelectionStrategy
(implements org.broadinstitute.hellbender.utils.read.mergealignment.
PrimaryAlignmentSelectionStrategy
)
org.broadinstitute.hellbender.utils.read.mergealignment.
EarliestFragmentPrimaryAlignmentSelectionStrategy
(implements org.broadinstitute.hellbender.utils.read.mergealignment.
PrimaryAlignmentSelectionStrategy
)
org.broadinstitute.hellbender.utils.read.mergealignment.
HitsForInsert
org.broadinstitute.hellbender.utils.read.mergealignment.
MostDistantPrimaryAlignmentSelectionStrategy
(implements org.broadinstitute.hellbender.utils.read.mergealignment.
PrimaryAlignmentSelectionStrategy
)
org.broadinstitute.hellbender.utils.read.mergealignment.
MultiHitAlignedReadIterator
(implements htsjdk.samtools.util.CloseableIterator<T>)
Interface Hierarchy
org.broadinstitute.hellbender.utils.read.mergealignment.
PrimaryAlignmentSelectionStrategy
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.broadinstitute.hellbender.utils.read.mergealignment.
HitsForInsert.NumPrimaryAlignmentState
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