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Hierarchy For Package org.broadinstitute.hellbender.utils.read
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
org.broadinstitute.hellbender.utils.read.
AlignmentUtils
org.broadinstitute.hellbender.utils.read.
AlignmentUtils.MismatchCount
org.broadinstitute.hellbender.utils.read.
ArtificialBAMBuilder
org.broadinstitute.hellbender.utils.read.
ArtificialReadIterator
(implements java.lang.Iterable<T>, java.util.Iterator<E>)
org.broadinstitute.hellbender.utils.read.
ArtificialReadQueryIterator
org.broadinstitute.hellbender.utils.read.
ArtificialReadUtils
org.broadinstitute.hellbender.utils.read.
CigarUtils
org.broadinstitute.hellbender.utils.read.
GATKReadToBDGAlignmentRecordConverter
org.broadinstitute.hellbender.utils.read.
HeaderlessSAMRecordCoordinateComparator
(implements java.util.Comparator<T>, java.io.Serializable)
org.broadinstitute.hellbender.utils.read.
PrimaryAlignmentKey
(implements java.lang.Comparable<T>)
org.broadinstitute.hellbender.utils.read.
ReadConstants
org.broadinstitute.hellbender.utils.read.
ReadCoordinateComparator
(implements java.util.Comparator<T>, java.io.Serializable)
org.broadinstitute.hellbender.utils.read.
ReadQueryNameComparator
(implements java.util.Comparator<T>, java.io.Serializable)
org.broadinstitute.hellbender.utils.read.
ReadUtils
org.broadinstitute.hellbender.utils.read.
SamComparison
org.broadinstitute.hellbender.utils.read.
SAMFileGATKReadWriter
(implements org.broadinstitute.hellbender.utils.read.
GATKReadWriter
)
org.broadinstitute.hellbender.utils.read.
SAMRecordToGATKReadAdapter
(implements org.broadinstitute.hellbender.utils.read.
GATKRead
, java.io.Serializable)
org.broadinstitute.hellbender.utils.read.
BDGAlignmentRecordToGATKReadAdapter
Interface Hierarchy
java.lang.AutoCloseable
java.io.Closeable
org.broadinstitute.hellbender.utils.read.
GATKReadWriter
htsjdk.samtools.util.Locatable
org.broadinstitute.hellbender.utils.read.
GATKRead
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.broadinstitute.hellbender.utils.read.
ReadUtils.ClippingTail
org.broadinstitute.hellbender.utils.read.
ReadsWriteFormat
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