org.broadinstitute.hellbender.utils.runtime

Class ProcessSettings

java.lang.Object

org.broadinstitute.hellbender.utils.runtime.ProcessSettings

public final class ProcessSettings
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ProcessSettings(java.lang.String[] command)
ProcessSettings(java.lang.String[] command, boolean redirectErrorStream, java.io.File directory, java.util.Map<java.lang.String,java.lang.String> environment, InputStreamSettings stdinSettings, OutputStreamSettings stdoutSettings, OutputStreamSettings stderrSettings)

Method Summary

Modifier and Type	Method and Description
protected java.lang.String[]	checkCommand(java.lang.String[] command)
protected InputStreamSettings	checkSettings(InputStreamSettings settings)
protected OutputStreamSettings	checkSettings(OutputStreamSettings settings)
java.lang.String[]	getCommand()
java.lang.String	getCommandString()
java.io.File	getDirectory()
java.util.Map<java.lang.String,java.lang.String>	getEnvironment()
OutputStreamSettings	getStderrSettings()
InputStreamSettings	getStdinSettings()
OutputStreamSettings	getStdoutSettings()
boolean	isRedirectErrorStream()
void	setCommand(java.lang.String[] command)
void	setDirectory(java.io.File directory)
void	setEnvironment(java.util.Map<java.lang.String,java.lang.String> environment)
void	setRedirectErrorStream(boolean redirectErrorStream)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProcessSettings

public ProcessSettings(java.lang.String[] command)

Parameters:

command - Command line to run.

ProcessSettings

public ProcessSettings(java.lang.String[] command,
                       boolean redirectErrorStream,
                       java.io.File directory,
                       java.util.Map<java.lang.String,java.lang.String> environment,
                       InputStreamSettings stdinSettings,
                       OutputStreamSettings stdoutSettings,
                       OutputStreamSettings stderrSettings)

Parameters:

command - Command line to run.

redirectErrorStream - true if stderr should be sent to stdout.

environment - Environment settings to override System.getEnv, or null to use System.getEnv.

directory - The directory to run the command in, or null to run in the current directory.

stdinSettings - Settings for writing to the process stdin.

stdoutSettings - Settings for capturing the process stdout.

stderrSettings - Setting for capturing the process stderr.

Method Detail

getCommand

public java.lang.String[] getCommand()

getCommandString

public java.lang.String getCommandString()

setCommand

public void setCommand(java.lang.String[] command)

isRedirectErrorStream

public boolean isRedirectErrorStream()

setRedirectErrorStream

public void setRedirectErrorStream(boolean redirectErrorStream)

getDirectory

public java.io.File getDirectory()

setDirectory

public void setDirectory(java.io.File directory)

getEnvironment

public java.util.Map<java.lang.String,java.lang.String> getEnvironment()

setEnvironment

public void setEnvironment(java.util.Map<java.lang.String,java.lang.String> environment)

getStdinSettings

public InputStreamSettings getStdinSettings()

getStdoutSettings

public OutputStreamSettings getStdoutSettings()

getStderrSettings

public OutputStreamSettings getStderrSettings()

checkCommand

protected java.lang.String[] checkCommand(java.lang.String[] command)

checkSettings

protected InputStreamSettings checkSettings(InputStreamSettings settings)

checkSettings

protected OutputStreamSettings checkSettings(OutputStreamSettings settings)