org.broadinstitute.hellbender.utils.smithwaterman

Enum SmithWatermanAligner.Implementation

java.lang.Object

java.lang.Enum<SmithWatermanAligner.Implementation>

org.broadinstitute.hellbender.utils.smithwaterman.SmithWatermanAligner.Implementation

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<SmithWatermanAligner.Implementation>

Enclosing interface:

SmithWatermanAligner

public static enum SmithWatermanAligner.Implementation
extends java.lang.Enum<SmithWatermanAligner.Implementation>

Enum Constant Summary

Enum Constants

Enum Constant and Description
AVX_ENABLED use the AVX enabled Smith-Waterman aligner
FASTEST_AVAILABLE use the fastest available Smith-Waterman aligner that runs on your hardware
JAVA use the pure java implementation of Smith-Waterman, works on all hardware

Method Summary

Modifier and Type	Method and Description
static SmithWatermanAligner.Implementation	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static SmithWatermanAligner.Implementation[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

FASTEST_AVAILABLE

public static final SmithWatermanAligner.Implementation FASTEST_AVAILABLE

use the fastest available Smith-Waterman aligner that runs on your hardware

AVX_ENABLED

public static final SmithWatermanAligner.Implementation AVX_ENABLED

use the AVX enabled Smith-Waterman aligner

JAVA

public static final SmithWatermanAligner.Implementation JAVA

use the pure java implementation of Smith-Waterman, works on all hardware

Method Detail

values

public static SmithWatermanAligner.Implementation[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (SmithWatermanAligner.Implementation c : SmithWatermanAligner.Implementation.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static SmithWatermanAligner.Implementation valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null