org.broadinstitute.hellbender.utils.variant

Class GATKVCFHeaderLines

java.lang.Object

org.broadinstitute.hellbender.utils.variant.GATKVCFHeaderLines

public class GATKVCFHeaderLines
extends java.lang.Object

This class contains the VCFHeaderLine definitions for the annotation keys in GATKVCFConstants. VCF-standard header lines are in VCFStandardHeaderLines, in htsjdk

Constructor Summary

Constructors

Constructor and Description
GATKVCFHeaderLines()

Method Summary

Modifier and Type	Method and Description
static java.util.Set<htsjdk.variant.vcf.VCFFilterHeaderLine>	getAllFilterLines()
static java.util.Set<htsjdk.variant.vcf.VCFFormatHeaderLine>	getAllFormatLines()
static java.util.Set<htsjdk.variant.vcf.VCFInfoHeaderLine>	getAllInfoLines()
static htsjdk.variant.vcf.VCFFilterHeaderLine	getFilterLine(java.lang.String id)
static htsjdk.variant.vcf.VCFFormatHeaderLine	getFormatLine(java.lang.String id)
static htsjdk.variant.vcf.VCFInfoHeaderLine	getInfoLine(java.lang.String id)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GATKVCFHeaderLines

public GATKVCFHeaderLines()

Method Detail

getInfoLine

public static htsjdk.variant.vcf.VCFInfoHeaderLine getInfoLine(java.lang.String id)

getFormatLine

public static htsjdk.variant.vcf.VCFFormatHeaderLine getFormatLine(java.lang.String id)

getFilterLine

public static htsjdk.variant.vcf.VCFFilterHeaderLine getFilterLine(java.lang.String id)

getAllInfoLines

public static java.util.Set<htsjdk.variant.vcf.VCFInfoHeaderLine> getAllInfoLines()

getAllFormatLines

public static java.util.Set<htsjdk.variant.vcf.VCFFormatHeaderLine> getAllFormatLines()

getAllFilterLines

public static java.util.Set<htsjdk.variant.vcf.VCFFilterHeaderLine> getAllFilterLines()