org.broadinstitute.hellbender.utils.variant

Enum GATKVariantContextUtils.GenotypeMergeType

java.lang.Object

java.lang.Enum<GATKVariantContextUtils.GenotypeMergeType>

org.broadinstitute.hellbender.utils.variant.GATKVariantContextUtils.GenotypeMergeType

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<GATKVariantContextUtils.GenotypeMergeType>

Enclosing class:

GATKVariantContextUtils

public static enum GATKVariantContextUtils.GenotypeMergeType
extends java.lang.Enum<GATKVariantContextUtils.GenotypeMergeType>

Enum Constant Summary

Enum Constants

Enum Constant and Description
PRIORITIZE Take genotypes in priority order (see the priority argument).
REQUIRE_UNIQUE Require that all samples/genotypes be unique between all inputs.
UNIQUIFY Make all sample genotypes unique by file.
UNSORTED Take the genotypes in any order.

Method Summary

Modifier and Type	Method and Description
static GATKVariantContextUtils.GenotypeMergeType	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static GATKVariantContextUtils.GenotypeMergeType[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

UNIQUIFY

public static final GATKVariantContextUtils.GenotypeMergeType UNIQUIFY

Make all sample genotypes unique by file. Each sample shared across RODs gets named sample.ROD.

PRIORITIZE

public static final GATKVariantContextUtils.GenotypeMergeType PRIORITIZE

Take genotypes in priority order (see the priority argument).

UNSORTED

public static final GATKVariantContextUtils.GenotypeMergeType UNSORTED

Take the genotypes in any order.

REQUIRE_UNIQUE

public static final GATKVariantContextUtils.GenotypeMergeType REQUIRE_UNIQUE

Require that all samples/genotypes be unique between all inputs.

Method Detail

values

public static GATKVariantContextUtils.GenotypeMergeType[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GATKVariantContextUtils.GenotypeMergeType c : GATKVariantContextUtils.GenotypeMergeType.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GATKVariantContextUtils.GenotypeMergeType valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null