Hierarchy For Package org.broadinstitute.hellbender.engine.spark

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.broadinstitute.hellbender.engine.spark.AssemblyRegionArgumentCollection (implements java.io.Serializable)
  • org.broadinstitute.hellbender.engine.spark.AssemblyRegionReadShardArgumentCollection (implements java.io.Serializable)
  • org.broadinstitute.hellbender.engine.spark.AssemblyRegionWalkerContext
  • org.broadinstitute.hellbender.cmdline.CommandLineProgram (implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
    • org.broadinstitute.hellbender.engine.spark.SparkCommandLineProgram (implements java.io.Serializable)
      • org.broadinstitute.hellbender.engine.spark.GATKSparkTool
        • org.broadinstitute.hellbender.engine.spark.AssemblyRegionWalkerSpark
        • org.broadinstitute.hellbender.engine.spark.IntervalWalkerSpark
        • org.broadinstitute.hellbender.engine.spark.LocusWalkerSpark
        • org.broadinstitute.hellbender.engine.spark.ReadWalkerSpark
        • org.broadinstitute.hellbender.engine.spark.VariantWalkerSpark
  • org.apache.hadoop.conf.Configured (implements org.apache.hadoop.conf.Configurable)
    • org.apache.hadoop.fs.FileSystem (implements java.io.Closeable)
      • org.apache.hadoop.fs.FilterFileSystem
        • org.apache.hadoop.fs.ChecksumFileSystem
          • org.apache.hadoop.fs.LocalFileSystem
            • org.broadinstitute.hellbender.engine.spark.NonChecksumLocalFileSystem
  • org.broadinstitute.hellbender.engine.spark.FindAssemblyRegionsSpark
  • org.broadinstitute.hellbender.engine.spark.GATKRegistrator (implements org.apache.spark.serializer.KryoRegistrator)
  • org.broadinstitute.hellbender.engine.spark.IntervalWalkerContext
  • org.broadinstitute.hellbender.engine.spark.LocusWalkerContext
  • org.broadinstitute.hellbender.engine.spark.ReadWalkerContext
  • com.esotericsoftware.kryo.Serializer<T>
    • org.broadinstitute.hellbender.engine.spark.JsonSerializer<T>
    • org.broadinstitute.hellbender.engine.spark.SAMRecordSerializer
    • org.broadinstitute.hellbender.engine.spark.SAMRecordToGATKReadAdapterSerializer
  • org.broadinstitute.hellbender.engine.spark.SparkCommandLineArgumentCollection (implements java.io.Serializable)
  • org.broadinstitute.hellbender.engine.spark.SparkContextFactory
  • org.broadinstitute.hellbender.engine.spark.SparkSharder
  • org.broadinstitute.hellbender.engine.spark.VariantWalkerContext

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.broadinstitute.hellbender.engine.spark.GATKSparkTool.ReadInputMergingPolicy