org.broadinstitute.hellbender.tools.copynumber.arguments

Class GermlineCallingArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.tools.copynumber.arguments.GermlineCallingArgumentCollection

All Implemented Interfaces:

java.io.Serializable

public final class GermlineCallingArgumentCollection
extends java.lang.Object
implements java.io.Serializable

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Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	CLASS_COHERENCE_LENGTH_LONG_NAME
static java.lang.String	CNV_COHERENCE_LENGTH_LONG_NAME
static java.lang.String	MAX_COPY_NUMBER_LONG_NAME
static java.lang.String	P_ACTIVE_LONG_NAME
static java.lang.String	P_ALT_LONG_NAME

Constructor Summary

Constructors

Constructor and Description
GermlineCallingArgumentCollection()

Method Summary

Modifier and Type	Method and Description
java.util.List<java.lang.String>	generatePythonArguments(GermlineCNVCaller.RunMode runMode)
void	validate()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

P_ALT_LONG_NAME

public static final java.lang.String P_ALT_LONG_NAME

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Constant Field Values

P_ACTIVE_LONG_NAME

public static final java.lang.String P_ACTIVE_LONG_NAME

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Constant Field Values

CNV_COHERENCE_LENGTH_LONG_NAME

public static final java.lang.String CNV_COHERENCE_LENGTH_LONG_NAME

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Constant Field Values

CLASS_COHERENCE_LENGTH_LONG_NAME

public static final java.lang.String CLASS_COHERENCE_LENGTH_LONG_NAME

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Constant Field Values

MAX_COPY_NUMBER_LONG_NAME

public static final java.lang.String MAX_COPY_NUMBER_LONG_NAME

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Constant Field Values

Constructor Detail

GermlineCallingArgumentCollection

public GermlineCallingArgumentCollection()

Method Detail

generatePythonArguments

public java.util.List<java.lang.String> generatePythonArguments(GermlineCNVCaller.RunMode runMode)

validate

public void validate()