org.broadinstitute.hellbender.tools.spark.sv.evidence

Class FindBreakpointEvidenceSpark.AssembledEvidenceResults

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.evidence.FindBreakpointEvidenceSpark.AssembledEvidenceResults

Enclosing class:

FindBreakpointEvidenceSpark

public static final class FindBreakpointEvidenceSpark.AssembledEvidenceResults
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
AssembledEvidenceResults(ReadMetadata readMetadata, java.util.List<SVInterval> assembledIntervals, java.util.List<AlignedAssemblyOrExcuse> alignedAssemblyOrExcuseList, java.util.List<EvidenceTargetLink> evidenceTargetLinks)

Method Summary

Modifier and Type	Method and Description
java.util.List<AlignedAssemblyOrExcuse>	getAlignedAssemblyOrExcuseList()
java.util.List<SVInterval>	getAssembledIntervals()
java.util.List<EvidenceTargetLink>	getEvidenceTargetLinks()
ReadMetadata	getReadMetadata()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AssembledEvidenceResults

public AssembledEvidenceResults(ReadMetadata readMetadata,
                                java.util.List<SVInterval> assembledIntervals,
                                java.util.List<AlignedAssemblyOrExcuse> alignedAssemblyOrExcuseList,
                                java.util.List<EvidenceTargetLink> evidenceTargetLinks)

Method Detail

getReadMetadata

public ReadMetadata getReadMetadata()

getAssembledIntervals

public java.util.List<SVInterval> getAssembledIntervals()

getAlignedAssemblyOrExcuseList

public java.util.List<AlignedAssemblyOrExcuse> getAlignedAssemblyOrExcuseList()

getEvidenceTargetLinks

public java.util.List<EvidenceTargetLink> getEvidenceTargetLinks()