org.broadinstitute.hellbender.tools.spark.transforms

Class ApplyBQSRSparkFn

java.lang.Object

org.broadinstitute.hellbender.tools.spark.transforms.ApplyBQSRSparkFn

public class ApplyBQSRSparkFn
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ApplyBQSRSparkFn()

Method Summary

Modifier and Type	Method and Description
static org.apache.spark.api.java.JavaRDD<GATKRead>	apply(org.apache.spark.api.java.JavaRDD<GATKRead> reads, org.apache.spark.broadcast.Broadcast<RecalibrationReport> reportBroadcast, htsjdk.samtools.SAMFileHeader readsHeader, ApplyBQSRArgumentCollection args)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ApplyBQSRSparkFn

public ApplyBQSRSparkFn()

Method Detail

apply

public static org.apache.spark.api.java.JavaRDD<GATKRead> apply(org.apache.spark.api.java.JavaRDD<GATKRead> reads,
                                                                org.apache.spark.broadcast.Broadcast<RecalibrationReport> reportBroadcast,
                                                                htsjdk.samtools.SAMFileHeader readsHeader,
                                                                ApplyBQSRArgumentCollection args)