org.broadinstitute.hellbender.utils

Class FisherExactTest

java.lang.Object

org.broadinstitute.hellbender.utils.FisherExactTest

public final class FisherExactTest
extends java.lang.Object

Implements the Fisher's exact test for 2x2 tables assuming the null hypothesis of odd ratio of 1.

Constructor Summary

Constructors

Constructor and Description
FisherExactTest()

Method Summary

Modifier and Type	Method and Description
static double	twoSidedPValue(int[][] normalizedTable) Computes the 2-sided pvalue of the Fisher's exact test on a normalized table that ensures that the sum of all four entries is less than 2 * 200.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FisherExactTest

public FisherExactTest()

Method Detail

twoSidedPValue

public static double twoSidedPValue(int[][] normalizedTable)

Computes the 2-sided pvalue of the Fisher's exact test on a normalized table that ensures that the sum of all four entries is less than 2 * 200.