org.broadinstitute.hellbender.utils.smithwaterman

Enum SmithWatermanJavaAligner.State

java.lang.Object

java.lang.Enum<SmithWatermanJavaAligner.State>

org.broadinstitute.hellbender.utils.smithwaterman.SmithWatermanJavaAligner.State

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<SmithWatermanJavaAligner.State>

Enclosing class:

SmithWatermanJavaAligner

protected static enum SmithWatermanJavaAligner.State
extends java.lang.Enum<SmithWatermanJavaAligner.State>

The state of a trace step through the matrix

Enum Constant Summary

Enum Constants

Enum Constant and Description
CLIP
DELETION
INSERTION
MATCH

Method Summary

Modifier and Type	Method and Description
static SmithWatermanJavaAligner.State	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static SmithWatermanJavaAligner.State[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

MATCH

public static final SmithWatermanJavaAligner.State MATCH

INSERTION

public static final SmithWatermanJavaAligner.State INSERTION

DELETION

public static final SmithWatermanJavaAligner.State DELETION

CLIP

public static final SmithWatermanJavaAligner.State CLIP

Method Detail

values

public static SmithWatermanJavaAligner.State[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (SmithWatermanJavaAligner.State c : SmithWatermanJavaAligner.State.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static SmithWatermanJavaAligner.State valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null