picard.analysis.artifacts

Class SequencingArtifactMetrics

java.lang.Object

picard.analysis.artifacts.SequencingArtifactMetrics

public class SequencingArtifactMetrics
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SequencingArtifactMetrics.BaitBiasDetailMetrics Bait bias artifacts broken down by context.
static class	SequencingArtifactMetrics.BaitBiasSummaryMetrics Summary analysis of a single bait bias artifact, also known as a reference bias artifact.
static class	SequencingArtifactMetrics.PreAdapterDetailMetrics Pre-adapter artifacts broken down by context.
static class	SequencingArtifactMetrics.PreAdapterSummaryMetrics Summary analysis of a single pre-adapter artifact.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	BAIT_BIAS_DETAILS_EXT
static java.lang.String	BAIT_BIAS_SUMMARY_EXT
static java.lang.String	ERROR_SUMMARY_EXT
static java.lang.String	PRE_ADAPTER_DETAILS_EXT
static java.lang.String	PRE_ADAPTER_SUMMARY_EXT

Constructor Summary

Constructors

Constructor and Description
SequencingArtifactMetrics()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PRE_ADAPTER_SUMMARY_EXT

public static final java.lang.String PRE_ADAPTER_SUMMARY_EXT

See Also:

Constant Field Values

PRE_ADAPTER_DETAILS_EXT

public static final java.lang.String PRE_ADAPTER_DETAILS_EXT

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Constant Field Values

BAIT_BIAS_SUMMARY_EXT

public static final java.lang.String BAIT_BIAS_SUMMARY_EXT

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Constant Field Values

BAIT_BIAS_DETAILS_EXT

public static final java.lang.String BAIT_BIAS_DETAILS_EXT

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Constant Field Values

ERROR_SUMMARY_EXT

public static final java.lang.String ERROR_SUMMARY_EXT

See Also:

Constant Field Values

Constructor Detail

SequencingArtifactMetrics

public SequencingArtifactMetrics()