picard.sam.SamErrorMetric

Class ReadBaseStratification.ConsensusStratifier

java.lang.Object

picard.sam.SamErrorMetric.ReadBaseStratification.ConsensusStratifier

All Implemented Interfaces:

ReadBaseStratification.RecordAndOffsetStratifier<ReadBaseStratification.Consensus>

Enclosing class:

ReadBaseStratification

public static class ReadBaseStratification.ConsensusStratifier
extends java.lang.Object

Stratify by tags used during duplex and single index consensus calling.

Constructor Summary

Constructors

Constructor and Description
ConsensusStratifier()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getSuffix()
T	stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
ReadBaseStratification.Consensus	stratify(htsjdk.samtools.SAMRecord sam)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ConsensusStratifier

public ConsensusStratifier()

Method Detail

stratify

public ReadBaseStratification.Consensus stratify(htsjdk.samtools.SAMRecord sam)

getSuffix

public java.lang.String getSuffix()

stratify

public T stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                  htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Specified by:

stratify in interface ReadBaseStratification.RecordAndOffsetStratifier<T extends java.lang.Comparable<T>>