picard.sam.SamErrorMetric

Class ReadBaseStratification.FlowCellTileStratifier

java.lang.Object

picard.sam.SamErrorMetric.ReadBaseStratification.FlowCellTileStratifier

All Implemented Interfaces:

ReadBaseStratification.RecordAndOffsetStratifier<java.lang.Integer>

Enclosing class:

ReadBaseStratification

public static class ReadBaseStratification.FlowCellTileStratifier
extends java.lang.Object

Stratifies base into their read's tile which is parsed from the read-name.

Constructor Summary

Constructors

Constructor and Description
FlowCellTileStratifier()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getSuffix()
T	stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
java.lang.Integer	stratify(htsjdk.samtools.SAMRecord sam)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FlowCellTileStratifier

public FlowCellTileStratifier()

Method Detail

stratify

public java.lang.Integer stratify(htsjdk.samtools.SAMRecord sam)

getSuffix

public java.lang.String getSuffix()

stratify

public T stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                  htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Specified by:

stratify in interface ReadBaseStratification.RecordAndOffsetStratifier<T extends java.lang.Comparable<T>>