picard.util

Class ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection

java.lang.Object

picard.util.ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection

All Implemented Interfaces:

ReferenceArgumentCollection

Enclosing class:

ScatterIntervalsByNs

public static class ScatterIntervalsByNs.ScatterIntervalsByNReferenceArgumentCollection
extends java.lang.Object
implements ReferenceArgumentCollection

Field Summary

Fields

Modifier and Type	Field and Description
java.io.File	REFERENCE

Constructor Summary

Constructors

Constructor and Description
ScatterIntervalsByNReferenceArgumentCollection()

Method Summary

Modifier and Type	Method and Description
java.io.File	getReferenceFile()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

REFERENCE

@Argument(shortName="R",
          doc="Reference sequence to use. Note: this tool requires that the reference fasta has both an associated index and a dictionary.")
public java.io.File REFERENCE

Constructor Detail

ScatterIntervalsByNReferenceArgumentCollection

public ScatterIntervalsByNReferenceArgumentCollection()

Method Detail

getReferenceFile

public java.io.File getReferenceFile()

Specified by:

getReferenceFile in interface ReferenceArgumentCollection

Returns:

The reference provided by the user, if any, or the default, if any.