org.broadinstitute.hellbender.cmdline.argumentcollections

Class DbsnpArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.cmdline.argumentcollections.DbsnpArgumentCollection

All Implemented Interfaces:

java.io.Serializable

public final class DbsnpArgumentCollection
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
FeatureInput<htsjdk.variant.variantcontext.VariantContext>	dbsnp A dbSNP VCF file.
static java.lang.String	DBSNP_LONG_NAME
static java.lang.String	DBSNP_SHORT_NAME

Constructor Summary

Constructors

Constructor and Description
DbsnpArgumentCollection()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DBSNP_LONG_NAME

public static final java.lang.String DBSNP_LONG_NAME

See Also:

Constant Field Values

DBSNP_SHORT_NAME

public static final java.lang.String DBSNP_SHORT_NAME

See Also:

Constant Field Values

dbsnp

@Argument(fullName="dbsnp",
          shortName="D",
          doc="dbSNP file",
          optional=true)
public FeatureInput<htsjdk.variant.variantcontext.VariantContext> dbsnp

A dbSNP VCF file.

Constructor Detail

DbsnpArgumentCollection

public DbsnpArgumentCollection()