org.broadinstitute.hellbender.cmdline.argumentcollections

Class OptionalVariantInputArgumentCollection

java.lang.Object

org.broadinstitute.hellbender.cmdline.argumentcollections.OptionalVariantInputArgumentCollection

All Implemented Interfaces:

java.io.Serializable

public final class OptionalVariantInputArgumentCollection
extends java.lang.Object
implements java.io.Serializable

An argument collection for use with tools that accept zero or more input files containing VariantContext records (eg., VCF files).

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
java.util.List<FeatureInput<htsjdk.variant.variantcontext.VariantContext>>	variantFiles

Constructor Summary

Constructors

Constructor and Description
OptionalVariantInputArgumentCollection()

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

variantFiles

@Argument(fullName="variant",
          shortName="V",
          doc="Variants file",
          optional=true)
public java.util.List<FeatureInput<htsjdk.variant.variantcontext.VariantContext>> variantFiles

Constructor Detail

OptionalVariantInputArgumentCollection

public OptionalVariantInputArgumentCollection()