org.broadinstitute.hellbender.exceptions

Class UserException.MissingIndex

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

org.broadinstitute.hellbender.exceptions.UserException

org.broadinstitute.hellbender.exceptions.UserException.MissingIndex

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

UserException

public static class UserException.MissingIndex
extends UserException

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.exceptions.UserException

UserException.BadInput, UserException.BadTempDir, UserException.CannotExecuteScript, UserException.CannotHandleGzippedRef, UserException.CouldNotCreateOutputFile, UserException.CouldNotIndexFile, UserException.CouldNotReadInputFile, UserException.EmptyIntersection, UserException.FailsStrictValidation, UserException.HardwareFeatureException, UserException.HeaderMissingReadGroup, UserException.IncompatibleRecalibrationTableParameters, UserException.IncompatibleSequenceDictionaries, UserException.LexicographicallySortedSequenceDictionary, UserException.MalformedBAM, UserException.MalformedFile, UserException.MalformedGenomeLoc, UserException.MalformedRead, UserException.MisencodedQualityScoresRead, UserException.MissingContigInSequenceDictionary, UserException.MissingIndex, UserException.MissingReference, UserException.MissingReferenceDictFile, UserException.MissingReferenceFaiFile, UserException.MissingReferenceGziFile, UserException.NoSuitableCodecs, UserException.ReadMissingReadGroup, UserException.Require2BitReferenceForBroadcast, UserException.SequenceDictionaryIsMissingContigLengths, UserException.UnimplementedFeature, UserException.VQSRNegativeModelFailure, UserException.VQSRPositiveModelFailure, UserException.WrongFeatureType

Constructor Summary

Constructors

Constructor and Description
MissingIndex(java.lang.String message)
MissingIndex(java.lang.String file, java.lang.String message)

Method Summary

Methods inherited from class org.broadinstitute.hellbender.exceptions.UserException

getMessage

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MissingIndex

public MissingIndex(java.lang.String message)

MissingIndex

public MissingIndex(java.lang.String file,
                    java.lang.String message)