org.broadinstitute.hellbender.tools.spark.sv.discovery

Class SvDiscoverFromLocalAssemblyContigAlignmentsSpark.AssemblyContigsClassifiedByAlignmentSignatures

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.discovery.SvDiscoverFromLocalAssemblyContigAlignmentsSpark.AssemblyContigsClassifiedByAlignmentSignatures

Enclosing class:

SvDiscoverFromLocalAssemblyContigAlignmentsSpark

public static final class SvDiscoverFromLocalAssemblyContigAlignmentsSpark.AssemblyContigsClassifiedByAlignmentSignatures
extends java.lang.Object

Method Summary

Modifier and Type	Method and Description
org.apache.spark.api.java.JavaRDD<AssemblyContigWithFineTunedAlignments>	getContigsWithSignatureClassifiedAsComplex()
org.apache.spark.api.java.JavaRDD<AssemblyContigWithFineTunedAlignments>	getContigsWithSignatureClassifiedAsSimpleChimera()
org.apache.spark.api.java.JavaRDD<AssemblyContigWithFineTunedAlignments>	getContigsWithSignatureClassifiedAsUnknown()
void	unpersist()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getContigsWithSignatureClassifiedAsUnknown

public org.apache.spark.api.java.JavaRDD<AssemblyContigWithFineTunedAlignments> getContigsWithSignatureClassifiedAsUnknown()

getContigsWithSignatureClassifiedAsSimpleChimera

public org.apache.spark.api.java.JavaRDD<AssemblyContigWithFineTunedAlignments> getContigsWithSignatureClassifiedAsSimpleChimera()

getContigsWithSignatureClassifiedAsComplex

public org.apache.spark.api.java.JavaRDD<AssemblyContigWithFineTunedAlignments> getContigsWithSignatureClassifiedAsComplex()

unpersist

public void unpersist()