org.broadinstitute.hellbender.tools.spark.sv.evidence

Class BreakpointEvidence.LargeIndel

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.ReadEvidence

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.LargeIndel

Enclosing class:

BreakpointEvidence

public static final class BreakpointEvidence.LargeIndel
extends BreakpointEvidence.ReadEvidence

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	BreakpointEvidence.LargeIndel.Serializer

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

BreakpointEvidence.DiscordantReadPairEvidence, BreakpointEvidence.ExternalEvidence, BreakpointEvidence.InterContigPair, BreakpointEvidence.LargeIndel, BreakpointEvidence.MateUnmapped, BreakpointEvidence.OutiesPair, BreakpointEvidence.ReadEvidence, BreakpointEvidence.SameStrandPair, BreakpointEvidence.SplitRead, BreakpointEvidence.TemplateSizeAnomaly, BreakpointEvidence.WeirdTemplateSize

Method Summary

Modifier and Type	Method and Description
boolean	equals(java.lang.Object o)
protected void	serialize(com.esotericsoftware.kryo.Kryo kryo, com.esotericsoftware.kryo.io.Output output)
java.lang.String	toString()

Methods inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.ReadEvidence

getCigarString, getForwardStrand, getFragmentOrdinal, getMappingQuality, getReadGroup, getTemplateName, getTemplateSize, hashCode, isEvidenceUpstreamOfBreakpoint, stringRep

Methods inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

getDistalTargets, getLocation, getWeight, hasDistalTargets, isValidated, setValidated

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Method Detail

serialize

protected void serialize(com.esotericsoftware.kryo.Kryo kryo,
                         com.esotericsoftware.kryo.io.Output output)

Overrides:

serialize in class BreakpointEvidence.ReadEvidence

toString

public java.lang.String toString()

Overrides:

toString in class BreakpointEvidence.ReadEvidence

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class BreakpointEvidence.ReadEvidence