org.broadinstitute.hellbender.tools.spark.sv.evidence

Class ReadMetadata.PartitionBounds

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.evidence.ReadMetadata.PartitionBounds

Enclosing class:

ReadMetadata

public static final class ReadMetadata.PartitionBounds
extends java.lang.Object

A class to track the genomic location of the start of the first and last mapped reads in a partition.

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ReadMetadata.PartitionBounds.Serializer

Field Summary

Fields

Modifier and Type	Field and Description
static int	UNMAPPED

Constructor Summary

Constructors

Constructor and Description
PartitionBounds(int firstContigID, int firstStart, int lastContigID, int lastEnd, int span)

Method Summary

Modifier and Type	Method and Description
int	getFirstContigID()
int	getFirstStart()
int	getLastContigID()
int	getLastEnd()
int	getSpan()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

UNMAPPED

public static final int UNMAPPED

See Also:

Constant Field Values

Constructor Detail

PartitionBounds

public PartitionBounds(int firstContigID,
                       int firstStart,
                       int lastContigID,
                       int lastEnd,
                       int span)

Method Detail

getFirstContigID

public int getFirstContigID()

getFirstStart

public int getFirstStart()

getLastContigID

public int getLastContigID()

getLastEnd

public int getLastEnd()

getSpan

public int getSpan()