org.broadinstitute.hellbender.transformers

Interface ReadTransformer

All Superinterfaces:

java.util.function.Function<GATKRead,GATKRead>, java.io.Serializable, SerializableFunction<GATKRead,GATKRead>, java.util.function.UnaryOperator<GATKRead>

All Known Implementing Classes:

AdapterTrimTransformer, BaseQualityClipReadTransformer, BaseQualityReadTransformer, BQSRReadTransformer, DUSTReadTransformer, MappingQualityReadTransformer, MisencodedBaseQualityReadTransformer, NDNCigarReadTransformer, PalindromeArtifactClipReadTransformer, SimpleRepeatMaskTransformer, StripMateNumberTransformer

Functional Interface:

This is a functional interface and can therefore be used as the assignment target for a lambda expression or method reference.

@FunctionalInterface
public interface ReadTransformer
extends java.util.function.UnaryOperator<GATKRead>, SerializableFunction<GATKRead,GATKRead>

Classes which perform transformations from GATKRead -> GATKRead should implement this interface by overriding SerializableFunction#apply(GATKRead)

Field Summary

Fields

Modifier and Type	Field and Description
static long	serialVersionUID

Method Summary

Modifier and Type	Method and Description
default ReadTransformer	andThen(ReadTransformer after)
default ReadTransformer	compose(ReadTransformer before)
static ReadTransformer	identity()

Methods inherited from interface org.broadinstitute.hellbender.utils.SerializableFunction

apply

Methods inherited from interface java.util.function.Function

andThen, compose

Field Detail

serialVersionUID

static final long serialVersionUID

See Also:

Constant Field Values

Method Detail

andThen

default ReadTransformer andThen(ReadTransformer after)

compose

default ReadTransformer compose(ReadTransformer before)

identity

static ReadTransformer identity()

Specified by:

identity in interface java.util.function.Function<GATKRead,GATKRead>

Specified by:

identity in interface java.util.function.UnaryOperator<GATKRead>