org.broadinstitute.hellbender.utils.baq

Class BAQ.BAQCalculationResult

java.lang.Object

org.broadinstitute.hellbender.utils.baq.BAQ.BAQCalculationResult

Enclosing class:

BAQ

public static class BAQ.BAQCalculationResult
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
byte[]	bq
byte[]	rawQuals
byte[]	readBases
byte[]	refBases
int[]	state

Constructor Summary

Constructors

Constructor and Description
BAQCalculationResult(byte[] bases, byte[] quals, byte[] ref)
BAQCalculationResult(GATKRead read, byte[] ref)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

refBases

public byte[] refBases

rawQuals

public byte[] rawQuals

readBases

public byte[] readBases

bq

public byte[] bq

state

public int[] state

Constructor Detail

BAQCalculationResult

public BAQCalculationResult(GATKRead read,
                            byte[] ref)

BAQCalculationResult

public BAQCalculationResult(byte[] bases,
                            byte[] quals,
                            byte[] ref)