org.broadinstitute.hellbender.utils.runtime

Class CapturedStreamOutputSnapshot

java.lang.Object

org.broadinstitute.hellbender.utils.runtime.StreamOutput

org.broadinstitute.hellbender.utils.runtime.CapturedStreamOutput

org.broadinstitute.hellbender.utils.runtime.CapturedStreamOutputSnapshot

public final class CapturedStreamOutputSnapshot
extends CapturedStreamOutput

Stream output captured from a streaming stream.

Field Summary

Fields inherited from class org.broadinstitute.hellbender.utils.runtime.CapturedStreamOutput

bufferStream, processStream, STREAM_BLOCK_TRANSFER_SIZE

Fields inherited from class org.broadinstitute.hellbender.utils.runtime.StreamOutput

EMPTY

Constructor Summary

Constructors

Constructor and Description
CapturedStreamOutputSnapshot(OutputStreamSettings settings, java.io.InputStream processStream, java.io.PrintStream standardStream)

Method Summary

Modifier and Type	Method and Description
void	read() Drain the input stream to keep the process from backing up until it's empty.

Methods inherited from class org.broadinstitute.hellbender.utils.runtime.CapturedStreamOutput

getBufferBytes, isBufferTruncated

Methods inherited from class org.broadinstitute.hellbender.utils.runtime.StreamOutput

getBufferString, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CapturedStreamOutputSnapshot

public CapturedStreamOutputSnapshot(OutputStreamSettings settings,
                                    java.io.InputStream processStream,
                                    java.io.PrintStream standardStream)

Parameters:

settings - Settings that define what to capture.

processStream - Stream to capture output.

standardStream - Stream to write debug output.

Method Detail

read

public void read()
          throws java.io.IOException

Drain the input stream to keep the process from backing up until it's empty.

Overrides:

read in class CapturedStreamOutput

Throws:

java.io.IOException - When unable to read or write.