| Class | Description |
|---|---|
| MendelianViolation |
Class for the identification and tracking of mendelian violation.
|
| PedReader |
Reads PED file-formatted tabular text files
See http://www.broadinstitute.org/mpg/tagger/faq.html
See http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml#ped
The "ped" file format refers to the widely-used format for linkage pedigree data.
|
| Sample |
Represents an individual under study.
|
| SampleDB |
Simple database for managing samples
|
| SampleDBBuilder |
Class for creating a temporary in memory database of samples.
|
| Trio |
A class for imposing a trio structure on three samples; a common paradigm
|
| Enum | Description |
|---|---|
| Affection |
Categorical sample trait for association and analysis
Samples can have unknown status, be affected or unaffected by the
categorical trait, or they can be marked as actually having an
other trait value (stored in an associated value in the Sample class)
|
| PedigreeValidationType | |
| PedReader.Field | |
| PedReader.MissingPedField |
An enum that specifies which, if any, of the standard PED fields are
missing from the input records.
|
| Sex |
ENUM of possible human sexes: male, female, or unknown
|