| Class | Description |
|---|---|
| CollectHsMetrics |
This tool takes a SAM/BAM file input and collects metrics that are specific for sequence
datasets generated through hybrid-selection.
|
| CollectTargetedMetrics<METRIC extends MultilevelMetrics,COLLECTOR extends TargetMetricsCollector<METRIC>> |
Both CollectTargetedPCRMetrics and CollectHsSelection share virtually identical program structures except
for the name of their targeting mechanisms (e.g.
|
| CollectTargetedPcrMetrics |
This tool calculates a set of PCR-related metrics from an aligned SAM or
BAM file containing targeted sequencing data.
|
| HsMetricCollector |
Calculates HS metrics for a given SAM or BAM file.
|
| HsMetrics |
Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments.
|
| InsertSizeMetricsCollector |
Collects InsertSizeMetrics on the specified accumulationLevels using
|
| PanelMetricsBase |
A base class for Metrics for targeted panels.
|
| RnaSeqMetricsCollector | |
| TargetedPcrMetrics |
Metrics class for the analysis of reads obtained from targeted pcr experiments e.g.
|
| TargetedPcrMetricsCollector |
Calculates HS metrics for a given SAM or BAM file.
|
| TargetMetrics |
TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection
or Targeted PCR Techniques (TSCA).
|
| TargetMetricsBase |
TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection
or Targeted PCR Techniques (TSCA).
|
| TargetMetricsCollector<METRIC_TYPE extends MultilevelMetrics> |
TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection
or Targeted PCR Techniques (TSCA).
|
| TargetMetricsCollector.Coverage |
A simple class that is used to store the coverage information about an interval.
|
| Enum | Description |
|---|---|
| RnaSeqMetricsCollector.StrandSpecificity |