picard.sam.SamErrorMetric

Class ReadBaseStratification.CollectionStratifier

java.lang.Object

picard.sam.SamErrorMetric.ReadBaseStratification.CollectionStratifier

All Implemented Interfaces:

ReadBaseStratification.RecordAndOffsetStratifier

Enclosing class:

ReadBaseStratification

public static class ReadBaseStratification.CollectionStratifier
extends java.lang.Object
implements ReadBaseStratification.RecordAndOffsetStratifier

A CollectionStratifier is a stratifier that uses a collection of stratifiers to inform the stratification. For a given input, the result is the "Tuple" (actually repeated pairs) of outputs that the stratifiers return. The suffix for this stratifier is generated from the suffixes of the provided stratifiers.

Constructor Summary

Constructors

Constructor and Description
CollectionStratifier(java.util.Collection<ReadBaseStratification.RecordAndOffsetStratifier<?>> stratifiers)

Method Summary

Modifier and Type	Method and Description
java.lang.String	getSuffix()
java.lang.Comparable	stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CollectionStratifier

public CollectionStratifier(java.util.Collection<ReadBaseStratification.RecordAndOffsetStratifier<?>> stratifiers)

Method Detail

stratify

public java.lang.Comparable stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                                     htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)

Specified by:

stratify in interface ReadBaseStratification.RecordAndOffsetStratifier

getSuffix

public java.lang.String getSuffix()

Specified by:

getSuffix in interface ReadBaseStratification.RecordAndOffsetStratifier