org.broadinstitute.hellbender.exceptions

Class UserException.CouldNotCreateOutputFile

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

org.broadinstitute.hellbender.exceptions.UserException

org.broadinstitute.hellbender.exceptions.UserException.CouldNotCreateOutputFile

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

UserException

public static class UserException.CouldNotCreateOutputFile
extends UserException

Class UserException.CouldNotCreateOutputFile

For generic errors writing to output files

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.exceptions.UserException

UserException.BadInput, UserException.BadTempDir, UserException.CannotExecuteScript, UserException.CannotHandleGzippedRef, UserException.CouldNotCreateOutputFile, UserException.CouldNotIndexFile, UserException.CouldNotReadInputFile, UserException.EmptyIntersection, UserException.FailsStrictValidation, UserException.HardwareFeatureException, UserException.HeaderMissingReadGroup, UserException.IncompatibleRecalibrationTableParameters, UserException.IncompatibleSequenceDictionaries, UserException.LexicographicallySortedSequenceDictionary, UserException.MalformedBAM, UserException.MalformedFile, UserException.MalformedGenomeLoc, UserException.MalformedRead, UserException.MisencodedQualityScoresRead, UserException.MissingContigInSequenceDictionary, UserException.MissingIndex, UserException.MissingReference, UserException.MissingReferenceDictFile, UserException.MissingReferenceFaiFile, UserException.MissingReferenceGziFile, UserException.NoSuitableCodecs, UserException.ReadMissingReadGroup, UserException.SequenceDictionaryIsMissingContigLengths, UserException.UnimplementedFeature, UserException.VQSRNegativeModelFailure, UserException.VQSRPositiveModelFailure, UserException.WrongFeatureType

Field Summary

Fields inherited from class org.broadinstitute.hellbender.exceptions.UserException

MISSING_REFERENCE_FOR_CRAM

Constructor Summary

Constructors

Constructor and Description
CouldNotCreateOutputFile(java.io.File file, java.lang.Exception e)
CouldNotCreateOutputFile(java.io.File file, java.lang.String message)
CouldNotCreateOutputFile(java.io.File file, java.lang.String message, java.lang.Exception e)
CouldNotCreateOutputFile(java.lang.String message, java.lang.Exception e)
CouldNotCreateOutputFile(java.lang.String file, java.lang.String message)
CouldNotCreateOutputFile(java.lang.String filename, java.lang.String message, java.lang.Exception e)

Method Summary

Methods inherited from class org.broadinstitute.hellbender.exceptions.UserException

getMessage

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CouldNotCreateOutputFile

public CouldNotCreateOutputFile(java.io.File file,
                                java.lang.String message,
                                java.lang.Exception e)

CouldNotCreateOutputFile

public CouldNotCreateOutputFile(java.io.File file,
                                java.lang.String message)

CouldNotCreateOutputFile

public CouldNotCreateOutputFile(java.lang.String file,
                                java.lang.String message)

CouldNotCreateOutputFile

public CouldNotCreateOutputFile(java.lang.String filename,
                                java.lang.String message,
                                java.lang.Exception e)

CouldNotCreateOutputFile

public CouldNotCreateOutputFile(java.io.File file,
                                java.lang.Exception e)

CouldNotCreateOutputFile

public CouldNotCreateOutputFile(java.lang.String message,
                                java.lang.Exception e)