org.broadinstitute.hellbender.tools.copynumber.gcnv

Class GermlineCNVVariantComposer<DATA extends htsjdk.samtools.util.Locatable>

java.lang.Object

org.broadinstitute.hellbender.tools.copynumber.gcnv.GermlineCNVVariantComposer<DATA>

Direct Known Subclasses:

GermlineCNVIntervalVariantComposer, GermlineCNVSegmentVariantComposer

public abstract class GermlineCNVVariantComposer<DATA extends htsjdk.samtools.util.Locatable>
extends java.lang.Object

Base class for GermlineCNVIntervalVariantComposer and GermlineCNVSegmentVariantComposer.

Field Summary

Fields

Modifier and Type	Field and Description
protected htsjdk.variant.variantcontext.writer.VariantContextWriter	outputWriter
protected java.lang.String	sampleName

Method Summary

Modifier and Type	Method and Description
void	writeAll(java.util.List<DATA> dataList)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

outputWriter

protected final htsjdk.variant.variantcontext.writer.VariantContextWriter outputWriter

sampleName

protected final java.lang.String sampleName

Method Detail

writeAll

public final void writeAll(java.util.List<DATA> dataList)