org.broadinstitute.hellbender.tools.spark.sv.evidence

Class ReadMetadata.LibraryRawStatistics

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.evidence.ReadMetadata.LibraryRawStatistics

Enclosing class:

ReadMetadata

public static final class ReadMetadata.LibraryRawStatistics
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ReadMetadata.LibraryRawStatistics.Serializer

Constructor Summary

Constructors

Constructor and Description
LibraryRawStatistics(int maxTrackedValue)

Method Summary

Modifier and Type	Method and Description
void	addRead(int readLength, int summedQuals, int templateLength, boolean isTemplateLengthTestable)
LibraryStatistics	createLibraryStatistics(long nRefBases)
long	getNBases()
long	getNReads()
long	getTotalBaseQuality()
static ReadMetadata.LibraryRawStatistics	reduce(ReadMetadata.LibraryRawStatistics stats1, ReadMetadata.LibraryRawStatistics stats2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LibraryRawStatistics

public LibraryRawStatistics(int maxTrackedValue)

Method Detail

addRead

public void addRead(int readLength,
                    int summedQuals,
                    int templateLength,
                    boolean isTemplateLengthTestable)

getNReads

public long getNReads()

getNBases

public long getNBases()

getTotalBaseQuality

public long getTotalBaseQuality()

createLibraryStatistics

public LibraryStatistics createLibraryStatistics(long nRefBases)

reduce

public static ReadMetadata.LibraryRawStatistics reduce(ReadMetadata.LibraryRawStatistics stats1,
                                                       ReadMetadata.LibraryRawStatistics stats2)