SVKmer (gatk 4.1.7.0 API)

public abstract class SVKmer
extends java.lang.Object

Nested Classes
Modifier and Type	Class and Description
`static class`	`SVKmer.Base`

Fields
Modifier and Type	Field and Description
`protected static long[]`	`BYTEWISE_REVERSE_COMPLEMENT`

Constructors
Constructor and Description
`SVKmer()`

All Methods Static Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`abstract SVKmer`	`canonical(int kSize)`
`abstract SVKmer.Base`	`firstBase(int kSize)`
`abstract int`	`firstTrimer(int kSize)`
`abstract SVKmer.Base`	`lastBase()`
`abstract int`	`lastTrimer()`
`abstract SVKmer`	`predecessor(SVKmer.Base base, int kSize)`
`abstract SVKmer`	`reverseComplement(int kSize)`
`protected static long`	`reverseComplement(long val)`
`protected static long`	`reverseComplementByteValueAsLong(int bIn)`
`abstract SVKmer`	`successor(SVKmer.Base base, int kSize)`
`abstract java.lang.String`	`toString(int kSize)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

protected static final long[] BYTEWISE_REVERSE_COMPLEMENT

public abstract SVKmer successor(SVKmer.Base base,
                                 int kSize)

public abstract SVKmer predecessor(SVKmer.Base base,
                                   int kSize)

public abstract SVKmer reverseComplement(int kSize)

public abstract SVKmer canonical(int kSize)

public abstract SVKmer.Base firstBase(int kSize)

public abstract SVKmer.Base lastBase()

public abstract int firstTrimer(int kSize)

public abstract java.lang.String toString(int kSize)

protected static long reverseComplement(long val)

protected static long reverseComplementByteValueAsLong(int bIn)

Class SVKmer