org.broadinstitute.hellbender.tools.walkers.annotator

Interface Annotation

All Known Subinterfaces:

AlleleSpecificAnnotation, AS_StandardAnnotation, ReducibleAnnotation, StandardAnnotation, StandardHCAnnotation, StandardMutectAnnotation

All Known Implementing Classes:

AlleleFraction, AS_BaseQualityRankSumTest, AS_FisherStrand, AS_InbreedingCoeff, AS_MappingQualityRankSumTest, AS_QualByDepth, AS_RankSumTest, AS_ReadPosRankSumTest, AS_RMSMappingQuality, AS_StrandBiasMutectAnnotation, AS_StrandBiasTest, AS_StrandOddsRatio, BaseQuality, BaseQualityHistogram, BaseQualityRankSumTest, ChromosomeCounts, ClippingRankSumTest, CountNs, Coverage, DepthPerAlleleBySample, DepthPerSampleHC, ExcessHet, FisherStrand, FragmentLength, GenotypeAnnotation, GenotypeSummaries, InbreedingCoeff, InfoFieldAnnotation, LikelihoodRankSumTest, MappingQuality, MappingQualityRankSumTest, MappingQualityZero, OrientationBiasReadCounts, OriginalAlignment, PedigreeAnnotation, PerAlleleAnnotation, PossibleDeNovo, QualByDepth, RankSumTest, ReadPosition, ReadPosRankSumTest, ReferenceBases, RMSMappingQuality, SampleList, StrandBiasBySample, StrandBiasTest, StrandOddsRatio, TandemRepeat, UniqueAltReadCount, VariantAnnotation

public interface Annotation

An annotation group is a set of annotation that have something in common and should be added at the same time. This is a marker interface.