Hierarchy For Package org.broadinstitute.hellbender.tools.walkers

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.broadinstitute.hellbender.cmdline.CommandLineProgram (implements org.broadinstitute.barclay.argparser.CommandLinePluginProvider)
    • org.broadinstitute.hellbender.engine.GATKTool
      • org.broadinstitute.hellbender.tools.walkers.SplitIntervals
      • org.broadinstitute.hellbender.engine.WalkerBase
        • org.broadinstitute.hellbender.engine.LocusWalker
          • org.broadinstitute.hellbender.tools.walkers.MethylationTypeCaller
        • org.broadinstitute.hellbender.engine.ReadWalker
          • org.broadinstitute.hellbender.tools.walkers.RevertBaseQualityScores
          • org.broadinstitute.hellbender.tools.walkers.UnmarkDuplicates
        • org.broadinstitute.hellbender.engine.VariantWalkerBase
          • org.broadinstitute.hellbender.engine.MultiVariantWalker
            • org.broadinstitute.hellbender.engine.MultiVariantWalkerGroupedOnStart
              • org.broadinstitute.hellbender.tools.walkers.CombineGVCFs
          • org.broadinstitute.hellbender.engine.VariantLocusWalker
            • org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs
          • org.broadinstitute.hellbender.engine.VariantWalker
            • org.broadinstitute.hellbender.tools.walkers.CountVariants
  • org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFsEngine
  • org.broadinstitute.hellbender.tools.walkers.ReferenceConfidenceVariantContextMerger
  • org.broadinstitute.hellbender.tools.walkers.ReferenceConfidenceVariantContextMerger.VCWithNewAlleles