| Class | Description |
|---|---|
| AlleleFrequencyQC |
This tool uses VariantEval to bin variants in Thousand Genomes by allele frequency.
|
| VariantEval |
Given a variant callset, it is common to calculate various quality control metrics.
|
| VariantEvalReportWriter |
Class for writing the GATKReport for VariantEval
Accepts a fulled evaluated (i.e., there's no more data coming) set of stratifications and evaluators
and supports writing out the data in these evaluators to a GATKReport.
|